Meet our team

Research Staff

Fellows

Graduate Students

Undergraduates

Visiting Scholars

Alumni

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Amina Ann Qutub

Principal Investigator

Amina’s research focuses on the development of new computational methods and experimental analyses in order to uncover design principles of human cells during growth and regeneration. The Qutub Lab uses fundamental knowledge gained by understanding cellular communication to transform the treatment of hematological cancers and neurovascular diseases.

Bio | Resume | CV

email: amina.qutub@utsa.edu
department: Biomedical Engineering

program affiliations Brain Health, Regenerative Medicine, UTSA/UT-Health Sciences BME Program

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Byron Long

Research Scientist & Instructor

Byron Long’s doctoral research was in logic for programs that use dynamic memory. Byron built on his training in logic to develop innovative state machine models of endothelial cells and a modeling framework for testing biological hypotheses. He combines these approaches with novel image-analysis programs to study how human cells form tissues, and predictive algorithms to interpret how molecular and cell-level changes influence daily behaviors at a systems level. 

email: byron.long@utsa.edu

PhD:  Computer Science, Indiana U.

Postdoc: Bioengineering, Rice U.

Projects: Quantu, cytoNet

Awards: Computational Cancer Biology Training Fellow 

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George Britton

Graduate Student

George Britton is a PhD student in Rice’s Systems, Synthetic and Physical Biology Program. His project focuses on uncovering the mechanisms underlying human embyronic cell development into neural tissue. George is jointly advised by our collaborator Aryeh Warmflash, a stem cell biologist in Rice’s Biochemistry and Cell Biology Department.

email: glb3@rice.edu

BS:  Neurobiology, UT-Austin

Masters: Biochemistry, UT-Health Sciences

Projects: Ectoderm modeling, analysis of neural lineage 

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Haydon Lynch

Graduate Student

Haydon Lynch is a Master's student in UTSA's Department of Biomedical Engineering. His project focuses on the design of novel computational models to simulate the growth and function of developing human neural networks. Haydon joined the Qutub Lab in Fall 2018, with research experience in artificial neural network modeling and signal processing. Haydon's Master's thesis is supported by a U.S. Airforce award.

email: haydon.lynch@utsa.edu

BS:  Electrical Engineering, Georgia Southern University

Projects: Quantu, neural network modeling

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Zacharie Maloney

Graduate Student

Zacharie Maloney is a PhD student in UTSA's Department of Biomedical Engineering and the Joint UTSA/UTHSC Graduate Group in Biomedical Engineering. Integrating new modeling and experimental methods, Zach's project focuses on characterizing cellular and proteomic processes underlying changes in  daily behaviors indicative of brain health. Joining the Qutub Lab in Fall 2019, Zach brings experience in biomedical engineering, systems biology, software engineering and financial modeling. 

email: zacharie.maloney@gmail.com

BS:  Biomedical Engineering, Illinois Institute of Technology

Projects: Neural network modeling & experiments, Quantu

 

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Erin Pollet

Graduate Student

Erin Pollet is a PhD student in UTSA's Department of Biomedical Engineering and the Joint UTSA/UTHSC Graduate Group in Biomedical Engineering. Her project focuses on uncovering neural and neurovascular mechanisms underlying changes in  sleep and other daily behaviors using integrated modeling and experimental approaches. Joining the Qutub Lab in Fall 2018, Erin brings 10 years of clinical sleep experience as a registered polysomnographic technologist to her research project.

email: erin.pollet@utsa.edu

BS:  Biomedical Engineering, UTSA

Projects: Quantu, Correlating Behavior to Cellular Changes in Alzheimer's

Awards: Brain Health Consortium Seed Grant 2018  

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Elif Ozdemir Kaynak

Visiting Graduate Student

Elif is a PhD candidate in bioengineering at Canakkale Onsekiz Mart University. While visiting in the Qutub lab as part of her thesis work, she is developing a computational model of nanoparticle-encapsulated delivery of bioactive flavanoids (anthocyanins) through the blood-brain barrier and anthocyanin uptake as a potential novel treatment of brain cancer.

email: elifozdemir89@gmail.com

BS:  Bioengineering, Ege U.

Masters: Bioengineering, Ege U.

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Aishwarya Sathish

Undergraduate Student

Ash is a biomedical engineering undergraduate student applying computational and experimental methods to understand the development of neural networks. 

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Alexandria Raybon

Lab Manager

Allie is a biomedical engineering undergraduate student who joined the Qutub Lab in 2019 as lab manager.

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Qutub Lab Graduates, 2017-2019

Arun Mahadevan

PhD Alumnus

Thesis: Network Analysis of Developing Neural Progenitor Cells

Awards: NSF Neuroengineering IGERT Fellow; Ideas that Go Viral Speaker; Bioengineering Department Travel Award, 2015; Outstanding Student Poster Award GEM4 Mechanobiology of the Brain Workshop, 2015; IBB Travel Award, 2017; Screech People’s Choice Award, 2017; Bioengineering Innovation Day Research Pitch Award Winner, 2017; 3-Min Thesis Overall Winner & Alumni Choice Winner, 2018

email: asm7@seas.upenn.edu
PhD: Bioengineering, 2018

Current Position:  

Postdoctoral Fellow, Bassett Lab

University of Pennsylvania 

Tien Tang

PhD Alumna

Thesis: Identifying Image Derived Features of Radiation Therapy Response: Tumor and Normal Tissue

Awards: HHMI Med-Into-Grad Fellowship; Rice University Graduate Student Travel Award, 2015; Radiation Research Meeting Award, 2016; Smalley-Curl Institute’s Transdisciplinary Award for Best Student Talk, 2016; IBB Travel Award, 2018

email: tien.tang@bcm.edu

PhD: Bioengineering, 2018

Current Position:  

Postdoctoral Fellow, Gaber Lab

Texas Children's Hospital

Quentin (Hanyang) Li

Undergraduate Alumnus

Project: Design of image-based and machine learning methods for multicellular and intracellular analysis

Awards: Distinction in Research & Creative Works, 2018

 

email: hl43@rice.edu
BS: Bioengineering, 2018

Current Position:  

Graduate Student

Carnegie Mellon University

Chenyue Wendy Hu

PhD Alumna

Thesis: Data-Driven Discovery of Proteomic Hallmarks in Acute Myeloid Leukemia

Awards: NHGRI Travel Award for Genomics & Personalized Medicine 2016; HHMI Med-Into-Grad Fellowship; Texas Life Science Forum Presenter; DREAM 8 SubChallenge Winner; Texata Big Data Semi-Finalist; IGNITE Entrepreneurship Conference, Invited Participant; OwlSpark Summer Accelerator; IBB Travel Award (2014, 2016); Bioengineering Department Travel Award, 2015; Gold Medal, iGEM; 1st Prize, China’s National Undergraduate Mathematical Contest in Modeling; Bioinformatics Peer Prize Award, 2017; Best Thesis in Bioinformatics, 2018

email: wendyhu001@gmail.com 
PhD: Bioengineering, 2018

Current Position:  

Data Scientist, Uber Technologies

Founder, DiBS

Andrew Ligeralde

Undergraduate Alumnus

Project: Tools to interpret protein signatures in cancer and model neural stem cell development

Awards: National Science Foundation summer fellowship, National Science Foundation Graduate Fellowship, 2019

email: ligeralde@berkeley.edu
BS: Chemistry, 2018

Current Position:  

Graduate Student

University of California, Berkeley

André Schultz

PhD Alumnus

Thesis: Improved Methods for Constraint Based Modeling of Mammalian Systems

Awards: BMC Systems Biology Top 5 paper, 2015; NSF Travel Award, Pan American Advanced Studies Institute; Outstanding Bioengineering Graduate Teaching Assistant; Duke TIP Teaching Summer Internship; Jeffrey Michel Innovations in Systems Biology Dissertation Award, 2016

Website:  https://qutublab.org/andre-schultz/

email: ASchultz@mdanderson.org
PhD: Bioengineering, 2017

Current Position:  

Bioinformaticist

Stanford University, School of Medicine

Jennifer Dawkins

Undergraduate Alumna

Project:  Design and experimental testing of methods to predict leukemia patient outcomes

Awards:  Computational Cancer Biology Summer Research Fellowship, 2017; National Science Foundation Graduate Fellowship, 2017

email:  jendawk@mit.edu
BS: Bioengineering, 2017

Current Position:  

Graduate Student

Harvard / MIT HST Program

Sanjana Ranganathan

Undergraduate Alumna

Project: Crosstalk between insulin and hypoxic response pathways in glioma progression

Awards: Computational Cancer Biology Summer Research Fellowship, 2016

email: sr38@rice.edu
BS: Bioengineering, 2017

Global Medical Innovation, 2018

Current Position:  

Graduate Student / TA

Rice University

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Qutub Lab Alumni

Sean Tritley

Undergraduate Student, University of Texas at San Antonio

Keith Kern

Undergraduate Student, Trinity University

Kelsey Phelan, B.S.

Graduate Student, University of Texas at San Antonio

Arun Mahadevan, PhD

Postdoctoral Fellow, University of Pennsylvania

Tien Tang, PhD

Postdoctoral Fellow, Texas Children's Hospital

Sanket Mehta

Undergraduate Student, Rice University

Natalie Dickman

Undergraduate Student, Rice University

Andrew Ligeralde, B.S.

Graduate Student, University of California, Berkeley

Quentin (Hanyang) Li, B.S.

Graduate Student, Carnegie Mellon

Chenyue Wendy Hu, PhD

Data Scientist, Uber

Founder, DiBS

 

Andre Schultz, PhD

Bioinformaticist, Stanford University, School of Medicine

Sanjana Ranganathan, M.B.E., B.S.

Clinical Consultant, GE Healthcare

Kylie Balotin, B.S.

Graduate Student, Vanderbilt University

Nicholas (Cole) E. Grandel, B.S.

Graduate Student, Rice University (SSPB)

Jennifer Dawkins, B.S.

Graduate Student, MIT & Harvard University (HST) 

David Noren, PhD

Scientist, Phillips Research

Amada Abrego, M.B.E.

Graduate Student, Rice University (ECE, Neuro)

Alex Bisberg, B.S.

Graduate Student, University of Utah

Founder, DiBS

Ka Wai Lin, PhD

Data Scientist, Allstate

Angela Liao, B.S.

Graduate Student, University of California, San Diego

Jiwon Jung, B.S.

Graduate Student, University of Texas, Austin

Nikhil Gupte

Medical Student, UT-Health San Antonio

David Gabriel Mora-Boellstorff

Graduate Student, UT-Health Sciences, Houston

David Ryan, M.B.E.

Product Development Engineer, EKOS Corporation

Becky Zaunbrecher, PhD

Allen Institute for Cell Science

Rahul Rekhi, M.S.

Financial and Healthcare Advisor, Lazard

Holley Love, PhD

Engineer, JBL Technologies

Instructional Assistant Professor of Mechanical Engineering, University of Houston

Taylor Birk, B.S.

Software Engineer, Hewlett Packard

Rocio Nava

Head of Biomedical Engineering, San Jorge Hospital

Shun-Ming Ting, M.B.E.

Research Associate, Baylor

Heather York Brisendine, B.S.

Engineering Consultant, Alliantgroup Houston

Tyler Young, B.S.

Medical Student, Baylor College of Medicine

Grace Ching, B.S.

Medical Student, Texas A&M

Norman Truong, PhD

Clinical Data Consultant, Ritual

Ashley Kelsey

NAVWAR Test Manager, United States Air Force

Joanna Nathan, B.S., M.B.E.

Venture Fellow, Mercury Fund

Founder, Enventure

 

Duncan Eddy, M.S.

Capella Space Corporation

Abir Khan, M.D.

Clinician, Baylor College of Medicine

Alex Arevalos, PhD

Chief Technology Officer & Co-Founder, Alleviant Medical

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