Living Neural Networks: Dynamic Network Analysis of

Developing Neural Progenitor Cells

A.S. Mahadevan, N.E. Grandel, A. Ligeralde, J.T. Robinson, K. Francis, A.A. Qutub 

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bioRxiv 055533

Health Signatures During COVID-19:

A Precision Fitness Case Study

E.P. Pollet, A. Sathish, Z. Maloney, B.L. Long, J. Brethen, A.A. Qutub

medRxiv 10.1101/2020.12.07

cytoNet: Network Analysis of Cell Communities 

A.S. Mahadevan, B.L. Long, C.W. Hu, D.T. Ryan, N.E. Grandel, G.L. Britton, M. Bustos, M. Gonzalez Porras, K. Stojkova, A. Ligeralde, H. Son, J. Shannonhouse, J.T. Robinson, A. Warmflash, E. Brey, Y.S. Kim, A.A. Qutub

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bioRxiv 180273

A Quantitative Analysis of Heterogeneities and Hallmarks in Acute Myelogenous Leukaemia

C.W. Hu, Y.H. Qiu, A. Ligeralde, A.Y. Raybon, S.Y. Yoo, K.R. Coombes, A.A. Qutub+, S.M. Kornblau+, +co-senior authors

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Nature Biomedical Engineering, 2019, 3: 889-901.

Highlighted by Nature BME "News & Views" Prognostic Hallmarks in AML (Nov 2019)

A Novel Self-Organizing Embryonic Stem Cell System Reveals Signaling Logic Underlying the Patterning of Human Ectoderm

G. Britton, I. Heemskerk, R. Hodge, A.A. Qutub, A. Warmflash 

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Development, 2019, 146: dev179093

Highlighted by Development (Micro)patterning the Human Ectoderm (Oct 2019)

Image-based Classification of Tumor Type and Growth Rate using Machine Learning: a preclinical study

T.T. Tang, J. Zawaski, K. Francis, A.A. Qutub, M.W. Gaber

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Scientific Reports, 2019, 9: 12529.

Visually Guided Clustering in Biowheel: An Integration of Semi-Supervised Clustering with Interactive Visualization

C.W. Hu, A.J. Bisberg, A.A. Qutub

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bioRxiv 099739

Proteomic Profiling of Acute Promyelocytic Leukemia Identifies Two Protein Signatures Associated with Relapse

F.W. Hoff, C.W. Hu, A.A. Qutub, Y. Qiu, M.J. Hornbaker, C. Bueso-Ramos, H.A. Abbas, S.M. Post, E.S.J.M., de Bont, S.M. Kornblau 

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Proteomics – Clinical Applications 16: e1800133, 2019

Recurrent Patterns of Protein Expression Signatures in Pediatric Acute Lymphoblastic Leukemia (ALL): Recognition and Therapeutic Guidance

F. Hoff, C.W. Hu, Y.H. Qiu, A. Ligeralde, E. de Bont, S.Y. Yoo, A.A. Qutub, S.M. Kornblau, T. Horton

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Molecular Cancer Research, 2018

Recognition of Recurrent Protein Expression Patterns in Pediatric Acute Myeloid Leukemia (AML) Suggest New Therapeutic Targets

F. Hoff, C.W. Hu, Y.H. Qiu, S.Y. Yoo, E. de Bont, H. Mahmud, A.A. Qutub, T. Horton, S.M. Kornblau

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Molecular Cancer Research, 2018

Histone Modification Patterns using RPPA-based Profiling Predict Outcome in Acute Myeloid Leukemia Patients

A.D. van Dijk, C.W. Hu, E.S.J.M. de Bont, Y.H. Qiu, F.W. Hoff, S.Y. Yoo, K.R. Coombes, A.A. Qutub, S.M. Kornblau

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Proteomics, 2018

Advances in Glioblastoma Multiforme Treatment: New Models for Nanoparticle Therapy

E.O. Kaynak, A.A. Qutub, O.Y. Celiktas

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Frontiers in Physiology, 2018

Shrinkage Clustering: A Fast and Size-Constrained Algorithm for Biomedical Application

C.W. Hu, H. Li, A.A. Qutub

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BMC Bioinformatics, 2018

Quantitative Morphological and Cytological Analyses in Leukemia

C. Lantos, S.M. Kornblau, A.A. Qutub

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In: Hematology: Latest Research & Clinical Advances, 2018

Proteomics in Leukemia

C.W. Hu and A.A. Qutub 

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In: Myeloid Leukemia, 2018